Index

A

adjust_window_size() (bats_client.gui.napari_window.NapariWindow method)

Application (class in bats_client.app) axis_changed() (bats_client.gui.napari_window.NapariWindow method)

B

bats_client.app module bats_client.gui module bats_client.gui.main_window module bats_client.gui.napari_window module bats_client.gui.welcome_window module bats_client.utils module bats_client.utils.bentoml_model module bats_client.utils.fsimagestorage module bats_client.utils.settings module bats_client.utils.sync_src_dst module

bats_client.utils.utils module bats_server.models module bats_server.segmentationclasses module bats_server.serviceclasses module bats_server.utils module bats_server.utils.fsimagestorage module bats_server.utils.helpers module bats_server.utils.processing module BentomlModel (class in bats_client.utils.bentoml_model) browse_eval_clicked() (bats_client.gui.welcome_window.WelcomeWindow method) browse_inprogr_clicked() (bats_client.gui.welcome_window.WelcomeWindow method) browse_train_clicked() (bats_client.gui.welcome_window.WelcomeWindow method)

C

check_and_update_if_layers_changed() (bats_client.gui.napari_window.NapariWindow method) check_equal_arrays() (in module bats_client.utils.utils) check_existing_segmentations() (bats_client.app.Application method) clear_image_caches() (bats_client.gui.main_window.MainWindow method) closeEvent() (bats_client.gui.napari_window.NapariWindow method)

compute_masks_flows() (bats_server.models.CustomCellpose method) connect() (bats_client.utils.bentoml_model.BentomlModel method) convert_to_tensor() (in module bats_server.utils.processing) CustomCellpose (class in bats_server.models) CustomRunnable (class in bats_server.serviceclasses)

D

delete_image() (bats_client.utils.fsimagestorage.FilesystemImageStorage method)

delete_images() (bats_client.app.Application method)

E

eval() (bats_server.models.CustomCellpose method) eval_all_outputs() (bats_server.models.CustomCellpose method)

evaluate() (bats_server.serviceclasses.CustomRunnable method) eventFilter() (bats_client.gui.welcome_window.WelcomeWindow method) extract_features() (bats_client.app.Application method)

F

FilesystemImageStorage (class in bats_client.utils.fsimagestorage) (class in bats_server.utils.fsimagestorage)

G

GeneralSegmentation (class in bats_server.segmentationclasses) get_file_extension() (in module bats_server.utils.helpers) get_image_size_properties() (bats_server.utils.fsimagestorage.FilesystemImageStorage method) get_objects() (in module bats_server.utils.processing) get_path_name() (in module bats_client.utils.utils) (in module bats_server.utils.helpers)

get_path_parent() (in module bats_client.utils.utils) (in module bats_server.utils.helpers) get_path_stem() (in module bats_client.utils.utils) (in module bats_server.utils.helpers) get_relative_path() (in module bats_client.utils.utils) get_unsupported_files() (bats_client.utils.fsimagestorage.FilesystemImageStorage method)

I

ImageStorage (class in bats_client.app)

init() (in module bats_client.utils.settings) is_connected (bats_client.utils.bentoml_model.BentomlModel property)

J

join_path() (in module bats_client.utils.utils) (in module bats_server.utils.helpers)

L

load_image() (bats_client.app.Application method) (bats_client.app.ImageStorage method) (bats_client.utils.fsimagestorage.FilesystemImageStorage method)

M

main_window() (bats_client.gui.main_window.MainWindow method) MainWindow (class in bats_client.gui.main_window) masks_to_outlines() (bats_server.models.CustomCellpose method) Model (class in bats_client.app) module bats_client.app bats_client.gui bats_client.gui.main_window bats_client.gui.napari_window bats_client.gui.welcome_window bats_client.utils bats_client.utils.bentoml_model bats_client.utils.fsimagestorage bats_client.utils.settings bats_client.utils.sync_src_dst bats_client.utils.utils bats_server.models bats_server.segmentationclasses bats_server.serviceclasses bats_server.utils bats_server.utils.fsimagestorage bats_server.utils.helpers bats_server.utils.processing

move_image() (bats_client.utils.fsimagestorage.FilesystemImageStorage method) move_images() (bats_client.app.Application method)

N

NapariWindow (class in bats_client.gui.napari_window)

normalise() (in module bats_server.utils.processing)

O

on_add_to_curated_button_clicked() (bats_client.gui.napari_window.NapariWindow method) on_add_to_inprogress_button_clicked() (bats_client.gui.napari_window.NapariWindow method) on_assisted_labelling() (bats_client.gui.napari_window.NapariWindow method) on_extract_features_clicked() (bats_client.gui.main_window.MainWindow method) on_finished() (bats_client.gui.main_window.MainWindow method) on_item_eval_double_clicked() (bats_client.gui.main_window.MainWindow method) on_item_eval_selected() (bats_client.gui.main_window.MainWindow method) on_item_inprogr_double_clicked() (bats_client.gui.main_window.MainWindow method) on_item_inprogr_selected() (bats_client.gui.main_window.MainWindow method) on_item_train_double_clicked() (bats_client.gui.main_window.MainWindow method)

on_item_train_selected() (bats_client.gui.main_window.MainWindow method) on_launch_napari_button_clicked() (bats_client.gui.main_window.MainWindow method) on_progress() (bats_client.gui.main_window.WorkerThread method) on_progress_updated() (bats_client.gui.main_window.MainWindow method) on_prompting_mode_changed() (bats_client.gui.napari_window.NapariWindow method) on_remove_from_dataset_button_clicked() (bats_client.gui.napari_window.NapariWindow method) on_run_inference_button_clicked() (bats_client.gui.main_window.MainWindow method) on_save_to_folder_clicked() (bats_client.gui.napari_window.NapariWindow method) on_seg_channel_changed() (bats_client.gui.napari_window.NapariWindow method) on_text_changed() (bats_client.gui.welcome_window.WelcomeWindow method)

P

pad_image() (in module bats_server.utils.processing) prepare_img_for_eval() (bats_server.utils.fsimagestorage.FilesystemImageStorage method)

prepare_mask_for_save() (bats_server.utils.fsimagestorage.FilesystemImageStorage method) progress_updated (bats_client.gui.main_window.WorkerThread attribute)

R

read_config() (in module bats_client.utils.utils) (in module bats_server.utils.helpers) rescale_image() (bats_server.utils.fsimagestorage.FilesystemImageStorage method) resize_mask() (bats_server.utils.fsimagestorage.FilesystemImageStorage method)

run() (bats_client.gui.main_window.WorkerThread method) run_inference() (bats_client.app.Application method) run_train() (bats_client.app.Application method) (bats_client.app.Model method) (bats_client.utils.bentoml_model.BentomlModel method)

S

save_image() (bats_client.app.Application method) (bats_client.app.ImageStorage method) (bats_client.utils.fsimagestorage.FilesystemImageStorage method) search_images() (bats_client.utils.fsimagestorage.FilesystemImageStorage method) search_segs() (bats_client.app.Application method) (bats_client.app.ImageStorage method) segment_image() (bats_client.app.Model method) (bats_client.utils.bentoml_model.BentomlModel method) (bats_server.segmentationclasses.GeneralSegmentation method)

set_editable_mask() (bats_client.gui.napari_window.NapariWindow method) start_main() (bats_client.gui.welcome_window.WelcomeWindow method) SUPPORTED_RESOURCES (bats_server.serviceclasses.CustomRunnable attribute) SUPPORTS_CPU_MULTI_THREADING (bats_server.serviceclasses.CustomRunnable attribute) switch_controls() (bats_client.gui.napari_window.NapariWindow method) switch_to_instance_mask() (bats_client.gui.napari_window.NapariWindow method) switch_to_labels_mask() (bats_client.gui.napari_window.NapariWindow method)

T

task_finished (bats_client.gui.main_window.WorkerThread attribute)

try_server_connection() (bats_client.app.Application method)

U

update_instance_mask() (bats_client.gui.napari_window.NapariWindow method)

update_labels_mask() (bats_client.gui.napari_window.NapariWindow method)

W

WelcomeWindow (class in bats_client.gui.welcome_window)

WorkerThread (class in bats_client.gui.main_window)